STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apar_0047PFAM: histidine triad (HIT) protein; KEGG: pfl:PFL_2782 hypothetical protein. (164 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.887
Apar_0046
KEGG: hhe:HH1060 hypothetical protein.
       0.658
Apar_0048
PFAM: Abortive infection protein; KEGG: bcr:BCAH187_A2522 CAAX amino terminal protease family protein.
       0.610
Apar_1328
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase.
  
   0.565
Apar_0049
KEGG: scl:sce0203 hypothetical protein.
       0.438
Apar_0237
TIGRFAM: selenate reductase YgfK; PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ecy:ECSE_3142 putative oxidoreductase.
   
 
 0.437
Apar_0045
KEGG: aci:ACIAD0111 hypothetical protein.
       0.424
Your Current Organism:
Atopobium parvulum
NCBI taxonomy Id: 521095
Other names: A. parvulum DSM 20469, Atopobium parvulum ATCC 33793, Atopobium parvulum DSM 20469, Atopobium parvulum JCM 10300, Atopobium parvulum str. DSM 20469, Atopobium parvulum strain DSM 20469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.