STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apar_0185PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sit:TM1040_0396 4Fe-4S ferredoxin, iron- sulfur binding. (461 aa)    
Predicted Functional Partners:
Apar_1328
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase.
  
 
 0.958
Apar_0065
KEGG: hypothetical protein.
  
     0.768
Apar_1356
Hypothetical protein; KEGG: ACRC; acidic repeat containing.
  
     0.767
Apar_0672
TIGRFAM: rod shape-determining protein MreD.
 
     0.763
Apar_0871
Hypothetical protein; KEGG: sus:Acid_0029 ATP-dependent nuclease subunit B-like protein.
 
     0.751
Apar_0733
PFAM: protein of unknown function DUF164; KEGG: sfu:Sfum_1209 protein of unknown function DUF164.
 
 
   0.746
Apar_0669
SMART: Tetratricopeptide domain protein; KEGG: ubiquitously transcribed sex (x/y) chromosome tetratricopeptide repeat protein; K11447 histone demethylase.
  
     0.745
Apar_0667
Hypothetical protein; KEGG: bur:Bcep18194_C6723 adenylate/guanylate cyclase.
  
     0.744
Apar_0776
PFAM: ATP-binding region ATPase domain protein; KEGG: tgr:Tgr7_0895 DNA mismatch repair protein MutL.
 
     0.742
Apar_0066
KEGG: afr:AFE_2325 hypothetical protein.
  
     0.737
Your Current Organism:
Atopobium parvulum
NCBI taxonomy Id: 521095
Other names: A. parvulum DSM 20469, Atopobium parvulum ATCC 33793, Atopobium parvulum DSM 20469, Atopobium parvulum JCM 10300, Atopobium parvulum str. DSM 20469, Atopobium parvulum strain DSM 20469
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