STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apar_0201Hypothetical protein. (460 aa)    
Predicted Functional Partners:
Apar_0200
Hypothetical protein; KEGG: tdn:Suden_0941 restriction modification system DNA specificity subunit.
       0.531
Apar_0197
PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; KEGG: amc:MADE_03609 type I site-specific restriction-modification system, R (restriction) subunit and related helicase.
       0.463
Apar_0198
PFAM: restriction modification system DNA specificity domain; KEGG: neu:NE2496 restriction modification system, type I.
       0.450
Apar_0199
PFAM: N-6 DNA methylase; KEGG: gur:Gura_2095 N-6 DNA methylase.
       0.448
Your Current Organism:
Atopobium parvulum
NCBI taxonomy Id: 521095
Other names: A. parvulum DSM 20469, Atopobium parvulum ATCC 33793, Atopobium parvulum DSM 20469, Atopobium parvulum JCM 10300, Atopobium parvulum str. DSM 20469, Atopobium parvulum strain DSM 20469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.