Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Apar_0149 | Apar_0312 | TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: ccv:CCV52592_1797 CoA-substrate-specific enzyme activase domain-containing protein. | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_02573 acrAB operon repressor. | 0.443 |
Apar_0311 | Apar_0312 | Hypothetical protein. | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_02573 acrAB operon repressor. | 0.424 |
Apar_0312 | Apar_0149 | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_02573 acrAB operon repressor. | TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: ccv:CCV52592_1797 CoA-substrate-specific enzyme activase domain-containing protein. | 0.443 |
Apar_0312 | Apar_0311 | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_02573 acrAB operon repressor. | Hypothetical protein. | 0.424 |
Apar_0312 | Apar_0313 | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_02573 acrAB operon repressor. | Hypothetical protein. | 0.543 |
Apar_0312 | Apar_0339 | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_02573 acrAB operon repressor. | KEGG: rbe:RBE_0861 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase. | 0.400 |
Apar_0312 | Apar_0762 | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_02573 acrAB operon repressor. | KEGG: bca:BCE_2437 O-methyltransferase domain- containing protein. | 0.427 |
Apar_0313 | Apar_0312 | Hypothetical protein. | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_02573 acrAB operon repressor. | 0.543 |
Apar_0339 | Apar_0312 | KEGG: rbe:RBE_0861 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase. | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_02573 acrAB operon repressor. | 0.400 |
Apar_0762 | Apar_0312 | KEGG: bca:BCE_2437 O-methyltransferase domain- containing protein. | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_02573 acrAB operon repressor. | 0.427 |