STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apar_0500PFAM: regulatory protein TetR; KEGG: afw:Anae109_2507 TetR family transcriptional regulator. (241 aa)    
Predicted Functional Partners:
Apar_0499
TIGRFAM: YhgE/Pip N-terminal domain protein; YhgE/Pip C-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: bcy:Bcer98_0357 ABC-2 type transporter.
  
  
 0.552
Apar_0498
TIGRFAM: YhgE/Pip C-terminal domain protein; YhgE/Pip N-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: bcy:Bcer98_0357 ABC-2 type transporter.
  
  
 0.531
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
 0.519
Apar_1291
Transcriptional regulator, SARP family; KEGG: afw:Anae109_3347 transcriptional activator domain-containing protein.
  
  
 0.467
Apar_0409
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: plu:plu0110 DNA-binding transcriptional regulator CynR.
  
 
 0.464
Apar_0509
PFAM: major facilitator superfamily MFS_1; KEGG: swi:Swit_1701 major facilitator transporter.
 
  
 0.457
Apar_0916
Putative PAS/PAC sensor protein; PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; KEGG: gme:Gmet_2062 serine phosphatase.
  
 
 0.452
Apar_0149
TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: ccv:CCV52592_1797 CoA-substrate-specific enzyme activase domain-containing protein.
     
 0.443
Apar_0211
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_0246 ABC transporter related.
  
   
 0.429
Apar_0339
KEGG: rbe:RBE_0861 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase.
  
    0.400
Your Current Organism:
Atopobium parvulum
NCBI taxonomy Id: 521095
Other names: A. parvulum DSM 20469, Atopobium parvulum ATCC 33793, Atopobium parvulum DSM 20469, Atopobium parvulum JCM 10300, Atopobium parvulum str. DSM 20469, Atopobium parvulum strain DSM 20469
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