STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apar_0560Hypothetical protein. (109 aa)    
Predicted Functional Partners:
Apar_0556
Hypothetical protein.
       0.773
Apar_0557
Hypothetical protein.
       0.773
Apar_0558
Hypothetical protein.
       0.773
Apar_0559
Hypothetical protein.
       0.773
Apar_0561
KEGG: ent:Ent638_1018 putative methyltransferase.
       0.773
Apar_0562
Hypothetical protein.
       0.757
Apar_0563
KEGG: pag:PLES_25081 hypothetical protein.
       0.454
Apar_0554
Prophage antirepressor; PFAM: BRO domain protein; phage antirepressor protein; KEGG: bpm:BURPS1710b_1644 BRO domain-containing protein.
       0.447
Your Current Organism:
Atopobium parvulum
NCBI taxonomy Id: 521095
Other names: A. parvulum DSM 20469, Atopobium parvulum ATCC 33793, Atopobium parvulum DSM 20469, Atopobium parvulum JCM 10300, Atopobium parvulum str. DSM 20469, Atopobium parvulum strain DSM 20469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.