STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apar_0682PFAM: cobalt transport protein; KEGG: bsu:BSU01470 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Apar_0681
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vha:VIBHAR_05108 ATP-binding ABC transporter.
 
 
 0.982
Apar_0352
PFAM: cobalt transport protein; KEGG: bha:BH0166 hypothetical protein.
  
  
  0.975
Apar_1130
PFAM: cobalt transport protein; KEGG: bsu:BSU01470 hypothetical protein.
  
  
  0.974
Apar_0680
KEGG: bsu:BSU10010 hypothetical protein.
 
 
 0.973
Apar_0989
Hypothetical protein; KEGG: bcz:BCZK3009 ABC transporter, permease; cobalt transport protein.
     
  0.900
Apar_0353
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfm:VFMJ11_1661 ABC-type cobalt transport system, ATP-binding protein.
 
 
 0.867
Apar_1131
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_4065 ABC transporter related.
 
 
 0.849
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
 
     0.691
obg
GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
  
    0.640
Apar_0988
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_3323 ABC transporter, ATP-binding protein.
 
 
 0.619
Your Current Organism:
Atopobium parvulum
NCBI taxonomy Id: 521095
Other names: A. parvulum DSM 20469, Atopobium parvulum ATCC 33793, Atopobium parvulum DSM 20469, Atopobium parvulum JCM 10300, Atopobium parvulum str. DSM 20469, Atopobium parvulum strain DSM 20469
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