STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apar_0759PFAM: protein of unknown function UPF0157; KEGG: ppd:Ppro_1483 hypothetical protein. (190 aa)    
Predicted Functional Partners:
Apar_0760
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: msu:MS0597 GloA protein.
 
     0.678
Apar_0763
PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH0503 hypothetical protein.
 
     0.630
Apar_0758
PFAM: Methyltransferase type 11; KEGG: bcr:BCAH187_A3106 methyltransferase domain family.
       0.627
Apar_0746
PFAM: Methyltransferase type 11; KEGG: ban:BA2485 hypothetical protein.
 
     0.617
Apar_0761
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tgr:Tgr7_2811 methyltransferase type 11.
       0.564
queH
Protein of unknown function DUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).
 
      0.549
Apar_0424
Transcriptional regulator, AraC family; PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bce:BC4832 AraC family transcriptional regulator.
 
    0.536
Apar_0762
KEGG: bca:BCE_2437 O-methyltransferase domain- containing protein.
       0.414
Your Current Organism:
Atopobium parvulum
NCBI taxonomy Id: 521095
Other names: A. parvulum DSM 20469, Atopobium parvulum ATCC 33793, Atopobium parvulum DSM 20469, Atopobium parvulum JCM 10300, Atopobium parvulum str. DSM 20469, Atopobium parvulum strain DSM 20469
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.