STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apar_0819Galactokinase; PFAM: GHMP kinase; KEGG: dde:Dde_3653 galactokinase. (403 aa)    
Predicted Functional Partners:
galT
UDP-glucose--hexose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; KEGG: bha:BH1109 galactose-1-phosphate uridylyltransferase.
 
 
 0.998
Apar_0818
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 0.995
Apar_0346
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: bce:BC5448 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 
 0.902
Apar_0645
PFAM: Aldose 1-epimerase; KEGG: bcz:BCZK1470 LacX protein.
 
 
 0.748
Apar_0125
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: mmw:Mmwyl1_3508 oxidoreductase domain- containing protein.
 
 
 0.726
Apar_0102
PFAM: glycoside hydrolase family 2 sugar binding; Ig domain protein; glycoside hydrolase family 2 TIM barrel; coagulation factor 5/8 type domain protein; KEGG: sus:Acid_4901 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.635
Apar_0817
Transcriptional regulator, LacI family; KEGG: scl:sce3081 lactose operon repressor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
 
  
 0.611
Apar_0629
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: kpn:KPN_02199 bifunctional acetaldehyde- CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.464
Apar_0321
TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; KEGG: stm:STM3255 putative phosphotransferase system fructose-specific component IIB.
     
 0.460
Apar_1293
PFAM: Nucleotidyl transferase; KEGG: bha:BH3717 UTP-glucose-1-phosphate uridylyltransferase.
     
 0.455
Your Current Organism:
Atopobium parvulum
NCBI taxonomy Id: 521095
Other names: A. parvulum DSM 20469, Atopobium parvulum ATCC 33793, Atopobium parvulum DSM 20469, Atopobium parvulum JCM 10300, Atopobium parvulum str. DSM 20469, Atopobium parvulum strain DSM 20469
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