Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Apar_0882 | Apar_0889 | PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_6102 alpha/beta hydrolase fold. | TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: haloacid dehalogenase-like hydrolase family protein. | 0.408 |
Apar_0888 | Apar_0889 | PFAM: cell wall hydrolase/autolysin; putative cell wall binding repeat-containing protein; KEGG: hypothetical protein. | TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: haloacid dehalogenase-like hydrolase family protein. | 0.554 |
Apar_0889 | Apar_0882 | TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: haloacid dehalogenase-like hydrolase family protein. | PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_6102 alpha/beta hydrolase fold. | 0.408 |
Apar_0889 | Apar_0888 | TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: haloacid dehalogenase-like hydrolase family protein. | PFAM: cell wall hydrolase/autolysin; putative cell wall binding repeat-containing protein; KEGG: hypothetical protein. | 0.554 |
Apar_0889 | Apar_1046 | TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: haloacid dehalogenase-like hydrolase family protein. | KEGG: sfu:Sfum_3452 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family. | 0.409 |
Apar_1046 | Apar_0889 | KEGG: sfu:Sfum_3452 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family. | TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: haloacid dehalogenase-like hydrolase family protein. | 0.409 |