STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apar_0915Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; ATP-binding region ATPase domain protein; KEGG: ppr:PBPRA0351 anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family. (243 aa)    
Predicted Functional Partners:
Apar_0916
Putative PAS/PAC sensor protein; PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; KEGG: gme:Gmet_2062 serine phosphatase.
 
 
 0.997
Apar_0455
TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: bha:BH0529 RNA polymerase sigma factor SigB.
 
 
 0.979
Apar_1096
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bha:BH0527 positive regulator of sigma-B activity (anti-anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
 
 
 0.949
Apar_0065
KEGG: hypothetical protein.
  
     0.722
Apar_0066
KEGG: afr:AFE_2325 hypothetical protein.
 
    0.713
Apar_0185
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sit:TM1040_0396 4Fe-4S ferredoxin, iron- sulfur binding.
 
   
 0.710
Apar_1345
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bsu:BSU15770 protein kinase.
    
 
 0.708
Apar_1356
Hypothetical protein; KEGG: ACRC; acidic repeat containing.
  
     0.690
Apar_0667
Hypothetical protein; KEGG: bur:Bcep18194_C6723 adenylate/guanylate cyclase.
  
     0.686
Apar_0985
KEGG: spe:Spro_4633 gluconate periplasmic binding protein.
  
    0.667
Your Current Organism:
Atopobium parvulum
NCBI taxonomy Id: 521095
Other names: A. parvulum DSM 20469, Atopobium parvulum ATCC 33793, Atopobium parvulum DSM 20469, Atopobium parvulum JCM 10300, Atopobium parvulum str. DSM 20469, Atopobium parvulum strain DSM 20469
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