STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apar_0988PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_3323 ABC transporter, ATP-binding protein. (494 aa)    
Predicted Functional Partners:
Apar_0986
KEGG: bcy:Bcer98_2113 hypothetical protein.
     0.979
Apar_0989
Hypothetical protein; KEGG: bcz:BCZK3009 ABC transporter, permease; cobalt transport protein.
 
 
 0.976
Apar_0990
KEGG: bcy:Bcer98_2116 hypothetical protein.
 
   
 0.953
Apar_0991
SMART: Pyrrolo-quinoline quinone; KEGG: GK12566 gene product from transcript GK12566- RA.
 
    0.874
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.774
Apar_0933
PFAM: ABC transporter related; binding-protein- dependent transport systems inner membrane component; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: hap:HAPS_1116 ABC-type oligopeptide transport systems, ATP-binding/permease; Belongs to the binding-protein-dependent transport system permease family.
  
  
0.722
dcd
Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.
       0.716
Apar_1130
PFAM: cobalt transport protein; KEGG: bsu:BSU01470 hypothetical protein.
 
 
 0.683
Apar_0352
PFAM: cobalt transport protein; KEGG: bha:BH0166 hypothetical protein.
 
 
 0.639
Apar_0682
PFAM: cobalt transport protein; KEGG: bsu:BSU01470 hypothetical protein.
 
 
 0.619
Your Current Organism:
Atopobium parvulum
NCBI taxonomy Id: 521095
Other names: A. parvulum DSM 20469, Atopobium parvulum ATCC 33793, Atopobium parvulum DSM 20469, Atopobium parvulum JCM 10300, Atopobium parvulum str. DSM 20469, Atopobium parvulum strain DSM 20469
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.