STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apar_1276PFAM: amino acid permease-associated region; KEGG: prw:PsycPRwf_1531 amino acid permease- associated region. (480 aa)    
Predicted Functional Partners:
Apar_1046
KEGG: sfu:Sfum_3452 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
  
 0.875
Apar_1336
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: stt:t4488 trehalose-6-phosphate hydrolase.
  
 0.868
Apar_1275
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: swi:Swit_0681 amidohydrolase.
 
   
 0.783
Apar_0293
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: swi:Swit_0681 amidohydrolase.
 
   
 0.574
aroK-2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
 
 0.556
Apar_0629
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: kpn:KPN_02199 bifunctional acetaldehyde- CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
 
 0.470
Apar_1277
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bha:BH2117 LysR family transcriptional regulator.
  
  
 0.467
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.464
Apar_0628
Hypothetical protein; KEGG: mrd:Mrad2831_4408 O-succinylhomoserine (thiol)-lyase.
  
    0.463
Apar_0963
PFAM: Heavy metal transport/detoxification protein; KEGG: bmj:BMULJ_05226 Cu2+-exporting ATPase.
 
  
 0.431
Your Current Organism:
Atopobium parvulum
NCBI taxonomy Id: 521095
Other names: A. parvulum DSM 20469, Atopobium parvulum ATCC 33793, Atopobium parvulum DSM 20469, Atopobium parvulum JCM 10300, Atopobium parvulum str. DSM 20469, Atopobium parvulum strain DSM 20469
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