Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0034PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mag:amb0722 acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family. (487 aa)    
Predicted Functional Partners:
Tpau_2228
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ank:AnaeK_1527 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
     0.772
Tpau_1315
PFAM: MaoC domain protein dehydratase; Beta- ketoacyl synthase; Acyl transferase; domain of unknown function DUF1729; KEGG: nfa:nfa12570 putative fatty acid synthase.
  
 0.467
Tpau_1784
PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: rha:RHA1_ro00724 2-oxoacid ferredoxin oxidoreductase.
 
   
 0.450
Tpau_4034
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: krh:KRH_21370 putative acetolactate synthase large subunit; Belongs to the TPP enzyme family.
 
 
 0.450
Tpau_3840
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: nfa:nfa4790 putative acyl-CoA dehydrogenase.
 
 
 0.415
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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