Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0038PFAM: flavoprotein; KEGG: fra:Francci3_1816 flavoprotein. (172 aa)    
Predicted Functional Partners:
Tpau_0039
KEGG: saq:Sare_3599 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
    0.929
Tpau_0037
PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: car:cauri_2115 permease of the major facilitator superfamily.
       0.773
Tpau_3589
PFAM: protein of unknown function DUF574; KEGG: sen:SACE_5650 hypothetical protein.
  
     0.709
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
  
  
 0.554
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.547
Tpau_0391
Dual specificity protein phosphatase; KEGG: sma:SAV_5613 hypothetical protein.
  
     0.542
Tpau_3481
PFAM: NDP-hexose 23-dehydratase; KEGG: svi:Svir_29870 NDP-hexose 2,3-dehydratase.
  
     0.525
Tpau_2335
TIGRFAM: glycosyltransferase, MGT family; KEGG: rha:RHA1_ro04832 glycosyltransferase; Belongs to the UDP-glycosyltransferase family.
 
     0.523
Tpau_3480
Mycocerosate synthase., 6-deoxyerythronolide-B synthase; KEGG: sen:SACE_4141 type I modular polyketide synthase; PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; KR domain protein; Acyl transferase; NAD-dependent epimerase/dehydratase; phosphopantetheine- binding.
 
  
 0.496
Tpau_3487
PFAM: protein of unknown function DUF1205; glycosyl transferase family 28; KEGG: sen:SACE_0726 glycosyl transferase, NDP-D- desosamine: 3-L-mycarosyl erythronolide B.
 
     0.496
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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