Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0062PFAM: glycosyl transferase group 1; KEGG: fre:Franean1_0751 glycosyl transferase group 1. (353 aa)    
Predicted Functional Partners:
Tpau_0061
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: mpa:MAP0963c hypothetical protein.
 
  
 0.910
Tpau_0060
PFAM: glycosyl transferase group 1; glycosyl transferase family 2; KEGG: mul:MUL_4676 glycosyltransferase.
 
  
 0.878
Tpau_0059
KEGG: mpa:MAP0961c hypothetical protein.
 
     0.808
Tpau_0058
PFAM: glycosyl transferase group 1; KEGG: mmi:MMAR_4514 glycosyl transferase.
  
     0.669
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.576
Tpau_1580
PFAM: glycosyl transferase group 1; KEGG: mab:MAB_1018c glycosyl transferase.
  
     0.575
Tpau_0066
KEGG: art:Arth_4126 O-antigen polymerase.
 
  
 0.561
Tpau_2271
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: rha:RHA1_ro05742 sugar transferase; PFAM: sugar transferase.
 
  
 0.529
Tpau_3046
KEGG: mab:MAB_3511c DNA helicase II; PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein.
    
 
 0.498
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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