Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0072KEGG: rop:ROP_23330 hypothetical membrane protein. (157 aa)    
Predicted Functional Partners:
Tpau_0073
KEGG: nfa:nfa11270 hypothetical protein.
       0.614
Tpau_0074
PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: mbt:JTY_0106 putative integral membrane protein.
       0.608
Tpau_0068
Glucose-1-phosphate cytidylyltransferase; KEGG: sco:SCO0393 transferase.
       0.581
Tpau_0069
PFAM: LmbE family protein; KEGG: msm:MSMEG_5978 GlcNAc-PI de-N-acetylase family protein.
       0.581
Tpau_0070
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4- dehydrorhamnose reductase; KEGG: msm:MSMEG_5976 epimerase/dehydratase.
       0.581
Tpau_0071
PFAM: aminotransferase class-III; C- methyltransferase; KEGG: rha:RHA1_ro05728 glutamate-1-semialdehyde 2,1- aminomutase.
       0.581
Tpau_0067
PFAM: C-methyltransferase; Methyltransferase domain protein; Methyltransferase type 12; Methyltransferase type 11; KEGG: msm:MSMEG_5980 methyltransferase.
       0.559
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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