Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0104PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: bcv:Bcav_2708 peptidase M15B and M15C dd- carboxypeptidase VanY/endolysin. (196 aa)    
Predicted Functional Partners:
Tpau_2545
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: nfa:nfa32010 hypothetical protein.
  
  
 
0.914
Tpau_0952
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: nfa:nfa9380 putative penicillin-binding protein; Belongs to the peptidase S11 family.
     
 0.908
Tpau_0553
KEGG: rer:RER_06180 D-alanyl-D-alanine carboxypeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
     
 0.905
Tpau_0029
PFAM: penicillin-binding protein transpeptidase; KEGG: rha:RHA1_ro03698 peptidoglycan glycosyltransferase.
     
 0.903
Tpau_2652
KEGG: rha:RHA1_ro01094 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
     
 0.903
Tpau_0521
KEGG: fre:Franean1_7134 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein.
 
   
 0.720
Tpau_0520
KEGG: cai:Caci_5788 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
  
   
 0.609
Tpau_0105
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mab:MAB_4743c putative dehydrogenase/reductase.
       0.526
Tpau_0106
KEGG: mab:MAB_4744c hypothetical protein.
       0.476
Tpau_2594
Transcriptional regulator, LuxR family; KEGG: nfa:nfa18100 putative transcriptional regulator; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR.
  
     0.424
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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