Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0109PFAM: Protein of unknown function DUF2302; KEGG: rer:RER_47870 hypothetical protein. (170 aa)    
Predicted Functional Partners:
Tpau_2497
KEGG: nfa:nfa49840 hypothetical protein; PFAM: Curculin domain protein (mannose-binding) lectin; Peptidoglycan-binding lysin domain; SMART: Curculin domain protein (mannose-binding) lectin; Peptidoglycan-binding LysM.
 
     0.699
Tpau_4081
KEGG: sgr:SGR_4345 hypothetical protein.
  
     0.586
Tpau_2467
KEGG: nfa:nfa11910 hypothetical protein.
  
     0.527
Tpau_3803
KEGG: mab:MAB_1289c hypothetical protein.
  
     0.526
Tpau_2466
PFAM: Uncharacterised conserved protein UCP07580; KEGG: rop:ROP_04670 hypothetical protein.
  
     0.514
Tpau_1496
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: mva:Mvan_2950 peptidylprolyl isomerase, FKBP- type.
  
     0.457
Tpau_3062
PFAM: protein of unknown function UPF0089; KEGG: mab:MAB_1278 hypothetical protein.
  
     0.448
Tpau_2204
PFAM: Abortive infection protein; KEGG: nfa:nfa5750 hypothetical protein.
  
     0.431
Tpau_2730
KEGG: mab:MAB_1013 hypothetical protein.
  
     0.410
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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