Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0111KEGG: mab:MAB_3790 hypothetical protein. (186 aa)    
Predicted Functional Partners:
Tpau_0112
PFAM: RNA-binding S4 domain protein; KEGG: mgi:Mflv_3643 RNA-binding S4 domain- containing protein.
       0.773
Tpau_0113
Isochorismatase; KEGG: mab:MAB_4406 isochorismatase/phenazine biosynthesis protein PhzD; PFAM: isochorismatase hydrolase.
       0.581
Tpau_0110
PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro03731 alpha/beta hydrolase.
       0.466
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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