Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0129KEGG: rer:RER_05160 hypothetical protein. (139 aa)    
Predicted Functional Partners:
Tpau_0128
Hypothetical protein.
       0.730
Tpau_0130
PFAM: peptidase S49; KEGG: ami:Amir_0066 peptidase S49.
       0.668
Tpau_1629
KEGG: rer:RER_24560 hypothetical protein.
  
     0.575
Tpau_1442
KEGG: mab:MAB_0392c hypothetical protein.
  
   
 0.574
Tpau_0453
KEGG: mab:MAB_0392c hypothetical protein.
  
   
 0.523
Tpau_0107
KEGG: rop:ROP_35350 glutamate synthase large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II.
       0.461
Tpau_0127
Hypothetical protein.
       0.446
Tpau_0131
Rhodanese domain protein; KEGG: nfa:nfa1230 hypothetical protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
       0.437
Tpau_0132
KEGG: nfa:nfa1240 hypothetical protein.
       0.429
Tpau_0133
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: nfa:nfa1250 putative glycerophosphoryl diester phosphodiesterase.
       0.429
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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