Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0151KEGG: npu:Npun_F0186 hypothetical protein. (244 aa)    
Predicted Functional Partners:
Tpau_0152
Hypothetical protein.
       0.773
Tpau_0153
Hypothetical protein.
       0.714
Tpau_0150
Hypothetical protein.
       0.570
Tpau_0154
KEGG: rer:RER_00790 hypothetical protein.
       0.508
Tpau_0155
KEGG: sgr:SGR_4457 hypothetical protein.
       0.439
Tpau_0156
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: rop:ROP_39230 hypothetical protein.
       0.439
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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