Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0155KEGG: sgr:SGR_4457 hypothetical protein. (352 aa)    
Predicted Functional Partners:
Tpau_0156
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: rop:ROP_39230 hypothetical protein.
     
 0.794
Tpau_0331
KEGG: msm:MSMEG_0067 hypothetical protein.
 
 
 0.717
Tpau_0154
KEGG: rer:RER_00790 hypothetical protein.
       0.655
Tpau_0094
KEGG: mgi:Mflv_3888 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein.
  
 
 0.635
Tpau_0747
KEGG: mbt:JTY_1130 putative membrane glycine and proline rich protein.
  
 
 0.604
Tpau_2172
KEGG: mjl:Mjls_2514 hypothetical protein.
  
 
 0.604
Tpau_3909
KEGG: msm:MSMEG_6171 hypothetical protein.
  
 
 0.604
Tpau_0406
PFAM: response regulator receiver; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rer:RER_40230 two-component system thioredoxin reductase; SMART: response regulator receiver.
 
 
 0.593
Tpau_0107
KEGG: rop:ROP_35350 glutamate synthase large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II.
      
 0.591
Tpau_0407
Histidine kinase; KEGG: rer:RER_40240 two-component histidine kinase; PFAM: ATP-binding region ATPase domain protein; cyclic nucleotide-binding; SMART: ATP-binding region ATPase domain protein.
 
 
 
 0.561
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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