Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0164PFAM: UbiA prenyltransferase; KEGG: rer:RER_02140 hypothetical protein. (306 aa)    
Predicted Functional Partners:
Tpau_0165
KEGG: rop:ROP_39350 arabinosyltransferase AftB.
 
  
 0.952
Tpau_0162
KEGG: nfa:nfa1770 putative galactofuranosyltransferase.
  
  
 0.929
Tpau_0163
KEGG: mva:Mvan_5648 phosphoesterase, PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related.
 
  
 0.925
Tpau_4119
PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro04078 FAD linked oxidoreductase.
 
  
 0.886
Tpau_0161
TIGRFAM: UDP-galactopyranose mutase; KEGG: msm:MSMEG_6404 UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like.
     
 0.836
Tpau_4120
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rer:RER_02340 oxidoreductase.
 
  
 0.790
Tpau_2177
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rer:RER_31610 oxidoreductase.
 
  
 0.783
Tpau_4106
PFAM: GtrA family protein; KEGG: rha:RHA1_ro04079 hypothetical protein.
 
     0.719
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
    0.629
Tpau_4121
KEGG: rer:RER_02330 arabinosyltransferase AftA.
 
   
 0.618
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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