Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0240KEGG: mab:MAB_0545 protein lsr2 precursor. (111 aa)    
Predicted Functional Partners:
Tpau_2728
KEGG: mgi:Mflv_2770 hypothetical protein.
  
     0.606
Tpau_0829
KEGG: nfa:nfa6430 hypothetical protein.
  
     0.564
Tpau_0658
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rha:RHA1_ro02063 hypothetical protein.
  
     0.561
Tpau_2721
KEGG: rop:ROP_09180 hypothetical protein.
  
     0.535
Tpau_2167
KEGG: mav:MAV_2407 hypothetical protein.
  
     0.521
Tpau_1882
KEGG: mab:MAB_3005c hypothetical protein.
  
     0.510
Tpau_0739
PFAM: MaoC domain protein dehydratase; KEGG: rop:ROP_16600 beta-hydroxyacyl-[acyl-carrier- protein] dehydratase subunit HadB.
  
     0.507
Tpau_0241
Hypothetical protein.
       0.497
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
   
 0.496
Tpau_2908
PFAM: Methionine synthase vitamin-B12 independent; KEGG: rer:RER_23790 hypothetical protein.
  
     0.492
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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