Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0263KEGG: cms:CMS_2699 conjugal transfer protein. (583 aa)    
Predicted Functional Partners:
Tpau_0261
Hypothetical protein.
       0.818
Tpau_0262
Hypothetical protein.
       0.773
Tpau_0264
KEGG: rer:pREC1_0028 hypothetical protein.
       0.773
Tpau_0265
Hypothetical protein.
       0.773
Tpau_0253
PFAM: TrwC relaxase; KEGG: car:cauri_pET4482726 TraA protein.
 
   
 0.653
Tpau_0260
Hypothetical protein.
       0.598
Tpau_0258
Hypothetical protein.
       0.467
Tpau_0259
Hypothetical protein.
       0.467
Tpau_0266
Hypothetical protein.
       0.440
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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