Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0295PFAM: CsbD family protein; KEGG: mab:MAB_1241c hypothetical protein; Belongs to the UPF0337 (CsbD) family. (69 aa)    
Predicted Functional Partners:
Tpau_0296
PFAM: DoxX family protein; KEGG: rop:ROP_07010 hypothetical protein.
  
    0.536
Tpau_0959
PFAM: ABC-2 type transporter; KEGG: aau:AAur_3851 putative ABC transporter, efflux permease protein.
 
    0.441
Tpau_4101
KEGG: rop:ROP_39770 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
  
    0.401
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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