Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0307KEGG: sco:SCO4672 secreted protein. (338 aa)    
Predicted Functional Partners:
Tpau_0306
KEGG: sha:SH0532 poly-gamma-glutamate synthesis protein PgsC.
     
 0.816
Tpau_0304
Hypothetical protein.
       0.813
Tpau_0305
PFAM: Mur ligase middle domain protein; KEGG: dsy:DSY4395 hypothetical protein.
       0.813
Tpau_0308
Hypothetical protein; KEGG: scl:sce4411 putative secreted protein.
       0.813
Tpau_0302
PFAM: Integrase catalytic region; KEGG: mva:Mvan_0583 integrase catalytic subunit.
       0.566
Tpau_0303
PFAM: transposase IS3/IS911 family protein; KEGG: nca:Noca_2153 transposase IS3/IS911 family protein.
       0.566
Tpau_0300
PFAM: Integrase catalytic region; KEGG: msm:MSMEG_4105 transposase subunit.
       0.482
Tpau_0301
PFAM: transposase IS3/IS911 family protein; KEGG: mlu:Mlut_10240 transposase.
       0.482
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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