Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tpau_0327PFAM: PPE protein; KEGG: mkm:Mkms_0078 PPE protein. (445 aa)    
Predicted Functional Partners:
Tpau_0326
PFAM: PE domain protein; KEGG: mgi:Mflv_5460 PE domain-containing protein.
       0.746
Tpau_0328
Hypothetical protein.
       0.537
Tpau_3371
KEGG: nfa:nfa8210 hypothetical protein.
  
  
 0.482
Tpau_0330
KEGG: nfa:nfa8210 hypothetical protein.
  
  
 0.464
Tpau_0329
Hypothetical protein.
       0.454
Tpau_3370
KEGG: cgt:cgR_0697 hypothetical protein; Belongs to the WXG100 family.
     
 0.425
Tpau_0331
KEGG: msm:MSMEG_0067 hypothetical protein.
  
  
 0.412
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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