Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0331KEGG: msm:MSMEG_0067 hypothetical protein. (579 aa)    
Predicted Functional Partners:
Tpau_0332
Secretion protein snm4; KEGG: msm:MSMEG_0068 transmembrane protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
 
  
 0.971
Tpau_0334
KEGG: mgi:Mflv_5453 hypothetical protein.
 
     0.918
Tpau_0333
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: msm:MSMEG_0083 membrane-anchored mycosin mycp1.
 
     0.901
Tpau_0864
Secretion protein snm4; KEGG: nfa:nfa8270 hypothetical protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
     0.724
Tpau_0155
KEGG: sgr:SGR_4457 hypothetical protein.
 
 
 0.717
Tpau_3378
KEGG: nfa:nfa8520 hypothetical protein.
 
   
 0.716
Tpau_2084
KEGG: rha:RHA1_ro07216 hypothetical protein.
  
     0.702
Tpau_0881
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
  
     0.696
Tpau_3922
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
 
     0.693
Tpau_2062
Hypothetical protein; KEGG: similar to CG16995 CG16995-PA.
  
     0.690
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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