Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0338PFAM: isochorismatase hydrolase; KEGG: cai:Caci_2169 isochorismatase hydrolase. (183 aa)    
Predicted Functional Partners:
Tpau_0339
KEGG: sen:SACE_5167 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: Helix-turn-helix, AraC domain.
 
    0.889
Tpau_0337
PFAM: nitroreductase; KEGG: fal:FRAAL6601 putative oxidoreductase.
  
  
 0.573
Tpau_0335
KEGG: mul:MUP011 transmembrane serine/threonine- protein kinase PknQ; PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; periplasmic binding protein; SMART: serine/threonine protein kinase; tyrosine protein kinase.
       0.549
Tpau_0336
KEGG: rop:ROP_51460 hypothetical protein.
       0.544
Tpau_0333
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: msm:MSMEG_0083 membrane-anchored mycosin mycp1.
  
    0.428
Tpau_0331
KEGG: msm:MSMEG_0067 hypothetical protein.
       0.413
Tpau_0332
Secretion protein snm4; KEGG: msm:MSMEG_0068 transmembrane protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
       0.413
Tpau_0334
KEGG: mgi:Mflv_5453 hypothetical protein.
       0.413
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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