STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0340PFAM: regulatory protein TetR; KEGG: svi:Svir_30260 transcriptional regulator. (388 aa)    
Predicted Functional Partners:
Tpau_0853
PFAM: regulatory protein TetR; KEGG: sco:SCO0241 transcriptional regulator.
   
    0.570
Tpau_3248
Two component transcriptional regulator, winged helix family; KEGG: sma:SAV_2395 two-component system response regulator for high-affinity potassium transport system; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver.
   
    0.544
Tpau_0341
TIGRFAM: acetyl-CoA acetyltransferase; KEGG: svi:Svir_30250 acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.526
Tpau_0339
KEGG: sen:SACE_5167 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: Helix-turn-helix, AraC domain.
  
    0.514
Tpau_2973
PFAM: regulatory protein TetR; KEGG: rha:RHA1_ro06435 TetR family transcriptional regulator.
  
    0.514
Tpau_3984
KEGG: ami:Amir_0216 hypothetical protein.
  
     0.502
Tpau_0342
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: mab:MAB_0851 fatty oxidation protein FadB.
  
  
 0.484
Tpau_3869
Putative transcriptional regulator, PucR family; KEGG: sma:SAV_1389 hypothetical protein.
  
    0.476
Tpau_2881
KEGG: rop:ROP_01020 putative CdaR family transcriptional regulator.
  
    0.475
Tpau_2095
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bcv:Bcav_0524 transcriptional regulator, LysR family.
   
   0.470
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.