Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0345PFAM: ANTAR domain protein; GAF domain protein; KEGG: kra:Krad_2459 response regulator receiver and ANTAR domain protein. (256 aa)    
Predicted Functional Partners:
Tpau_2812
PFAM: cyclase/dehydrase; KEGG: mbt:JTY_0876 hypothetical protein.
  
     0.631
Tpau_4221
KEGG: mva:Mvan_6060 hypothetical protein.
  
     0.575
Tpau_0346
Neprilysin; KEGG: nfa:nfa56400 putative peptidase; PFAM: peptidase M13; Peptidase M13, neprilysin- like.
       0.513
Tpau_3300
KEGG: nfa:nfa30170 hypothetical protein.
  
     0.513
Tpau_0107
KEGG: rop:ROP_35350 glutamate synthase large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II.
  
  
 0.504
Tpau_1703
uroporphyrin-III C-methyltransferase; KEGG: nfa:nfa40770 putative uroporphyrinogen III methylase; TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
  
 0.467
Tpau_0344
KEGG: gox:GOX1008 hypothetical protein.
       0.406
Tpau_1149
KEGG: rop:ROP_60070 hypothetical protein.
  
     0.406
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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