STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0347PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: nfa:nfa51880 putative peptidase. (686 aa)    
Predicted Functional Partners:
Tpau_3648
PFAM: Protein of unknown function DUF2505; KEGG: nfa:nfa51990 hypothetical protein.
  
     0.620
Tpau_0346
Neprilysin; KEGG: nfa:nfa56400 putative peptidase; PFAM: peptidase M13; Peptidase M13, neprilysin- like.
     
 0.544
Tpau_3374
KEGG: nfa:nfa8180 hypothetical protein.
  
     0.529
Tpau_0362
KEGG: rop:ROP_11180 hypothetical protein.
  
     0.499
Tpau_2240
KEGG: rop:ROP_69240 hypothetical membrane protein.
  
     0.487
Tpau_3657
KEGG: rop:ROP_18220 hypothetical membrane protein.
  
     0.465
Tpau_1973
KEGG: rop:ROP_69140 hypothetical protein.
  
     0.450
Tpau_2260
PFAM: regulatory protein TetR; KEGG: mab:MAB_0341 TetR family transcriptional regulator.
  
     0.450
Tpau_0173
KEGG: rop:ROP_39410 putative oxidoreductase; TIGRFAM: probable F420-dependent oxidoreductase; PFAM: Luciferase-like, subgroup.
  
     0.442
Tpau_2657
KEGG: rop:ROP_08270 hypothetical protein.
  
     0.406
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.