STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (267 aa)    
Predicted Functional Partners:
Tpau_0365
KEGG: nfa:nfa54850 hypothetical protein.
  
  
 0.950
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
 
 0.766
Tpau_0364
KEGG: mva:Mvan_0196 large membrane protein.
  
  
 0.704
Tpau_2152
tRNA (adenine-N(1)-)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
  
 
 0.695
Tpau_0371
KEGG: mab:MAB_4503c hypothetical protein.
       0.648
Tpau_0370
KEGG: rop:ROP_52280 hypothetical membrane protein.
       0.645
Tpau_2566
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: rop:ROP_69450 putative rRNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
 
 0.627
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
 
 0.615
Tpau_3537
TIM-barrel protein, nifR3 family; KEGG: mmi:MMAR_4857 transcriptional regulator; TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS.
 
 
 0.591
Tpau_0367
PFAM: protein of unknown function DUF1396; KEGG: mjl:Mjls_2429 hypothetical protein.
       0.570
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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