Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0376PFAM: Endoribonuclease L-PSP; KEGG: msm:MSMEG_1681 endoribonuclease L-PSP superfamily protein. (149 aa)    
Predicted Functional Partners:
Tpau_0375
KEGG: msm:MSMEG_1682 flavin-containing monooxygenase FMO.
    0.985
Tpau_0379
PFAM: protein of unknown function DUF1028; KEGG: msm:MSMEG_1680 hypothetical protein.
 
     0.877
Tpau_0381
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rop:ROP_14630 histamine dehydrogenase.
 
     0.805
Tpau_0382
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rha:RHA1_ro01787 LysR family transcriptional regulator.
  
     0.625
Tpau_0380
Amidohydrolase; KEGG: msm:MSMEG_1679 AmiB; TIGRFAM: amidohydrolase; PFAM: peptidase M20; Belongs to the peptidase M20A family.
 
     0.615
Tpau_0377
PFAM: transposase IS3/IS911 family protein; KEGG: mlu:Mlut_10240 transposase.
       0.501
Tpau_0378
PFAM: Integrase catalytic region; KEGG: msm:MSMEG_4105 transposase subunit.
       0.501
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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