Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0397PFAM: protein of unknown function DUF214; KEGG: rop:ROP_61080 hypothetical membrane protein. (856 aa)    
Predicted Functional Partners:
Tpau_0396
KEGG: nfa:nfa46550 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.982
Tpau_0646
KEGG: lxx:Lxx14530 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.865
Tpau_0245
KEGG: fre:Franean1_0530 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.764
Tpau_0415
KEGG: rha:RHA1_ro05189 xylose transporter.
  
     0.710
Tpau_2434
KEGG: rer:RER_54290 hypothetical protein.
  
 
 0.700
Tpau_0420
PFAM: UspA domain protein; KEGG: rop:ROP_52450 putative Usp family protein.
 
     0.588
Tpau_0398
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mmi:MMAR_4486 dehydrogenase.
       0.580
Tpau_0399
KEGG: mva:Mvan_4806 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein.
       0.574
Tpau_0395
KEGG: rer:RER_50940 hypothetical protein.
       0.568
Tpau_1210
PFAM: regulatory protein TetR; KEGG: rer:RER_41230 TetR family transcriptional regulator.
 
     0.508
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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