Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0416KEGG: rer:RER_11110 hypothetical protein. (443 aa)    
Predicted Functional Partners:
Tpau_0414
KEGG: rha:RHA1_ro05188 hypothetical protein.
 
   
 0.820
Tpau_0417
PFAM: acyltransferase 3; KEGG: rop:ROP_52410 putative acyltransferase.
 
   
 0.815
Tpau_2076
KEGG: rop:ROP_69960 hypothetical membrane protein.
  
     0.767
Tpau_0334
KEGG: mgi:Mflv_5453 hypothetical protein.
  
     0.766
Tpau_2927
KEGG: rha:RHA1_ro06456 hypothetical protein.
  
     0.765
Tpau_3651
KEGG: msm:MSMEG_0923 hypothetical protein.
  
     0.758
Tpau_0570
KEGG: nfa:nfa4100 hypothetical protein.
  
     0.756
Tpau_3374
KEGG: nfa:nfa8180 hypothetical protein.
  
     0.754
Tpau_0332
Secretion protein snm4; KEGG: msm:MSMEG_0068 transmembrane protein; TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571.
  
     0.753
Tpau_0943
KEGG: rop:ROP_62460 hypothetical protein.
  
     0.750
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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