Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0420PFAM: UspA domain protein; KEGG: rop:ROP_52450 putative Usp family protein. (164 aa)    
Predicted Functional Partners:
Tpau_2899
PFAM: amino acid-binding ACT domain protein; KEGG: nfa:nfa42600 hypothetical protein.
  
  
 0.714
Tpau_0419
Hypothetical protein.
       0.697
Tpau_0418
PFAM: coagulation factor 5/8 type domain protein; KEGG: rha:RHA1_ro05192 hypothetical protein.
     
 0.690
Tpau_3651
KEGG: msm:MSMEG_0923 hypothetical protein.
  
     0.690
Tpau_2240
KEGG: rop:ROP_69240 hypothetical membrane protein.
  
     0.682
Tpau_0845
KEGG: rha:RHA1_ro04983 hypothetical protein.
  
     0.664
Tpau_0170
KEGG: nfa:nfa1860 hypothetical protein.
  
   
 0.655
Tpau_0171
KEGG: mab:MAB_0178 cutinase precursor.
  
   
 0.630
Tpau_0415
KEGG: rha:RHA1_ro05189 xylose transporter.
  
   
 0.603
Tpau_3374
KEGG: nfa:nfa8180 hypothetical protein.
 
     0.602
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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