Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0462KEGG: mjl:Mjls_0458 hypothetical protein. (335 aa)    
Predicted Functional Partners:
Tpau_0460
PFAM: YibE/F family protein; KEGG: rop:ROP_55290 hypothetical membrane protein.
     
 0.670
Tpau_0461
PFAM: aminotransferase class I and II; KEGG: rer:RER_13320 alanine aminotransferase.
       0.633
Tpau_0463
PFAM: regulatory protein TetR; KEGG: bcv:Bcav_3630 transcriptional regulator, TetR family.
  
    0.593
Tpau_4215
KEGG: rer:RER_59980 hypothetical protein.
  
    0.473
Tpau_0397
PFAM: protein of unknown function DUF214; KEGG: rop:ROP_61080 hypothetical membrane protein.
  
    0.454
Tpau_0107
KEGG: rop:ROP_35350 glutamate synthase large subunit; PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II.
       0.426
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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