Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0472PFAM: Squalene/phytoene synthase; KEGG: krh:KRH_20840 phytoene synthase. (269 aa)    
Predicted Functional Partners:
Tpau_0484
KEGG: rha:RHA1_ro01107 phytoene dehydrogenase; TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase.
 
 0.994
Tpau_2662
PFAM: Polyprenyl synthetase; KEGG: nfa:nfa17390 putative polyprenyl synthase; Belongs to the FPP/GGPP synthase family.
 
 0.961
Tpau_2756
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.817
Tpau_0448
KEGG: mab:MAB_3139c hypothetical protein.
    
 0.792
nuoH
NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
   
 
 0.741
Tpau_2540
TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: mab:MAB_2779c glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.738
Tpau_1719
MATE efflux family protein; KEGG: nfa:nfa40630 putative DNA-damage-inducible protein F; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE.
   
  
 0.706
Tpau_2495
PFAM: Lycopene beta and epsilon cyclase; KEGG: nfa:nfa34900 putative lycopene cyclase.
 
  
 0.696
Tpau_3352
PFAM: fatty acid hydroxylase; KEGG: nfa:nfa53570 hypothetical protein.
  
 
 0.667
Tpau_0733
Trans-hexaprenyltranstransferase; KEGG: rha:RHA1_ro01991 polyprenyl synthetase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 
 0.645
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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