Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0478PFAM: Uncharacterised conserved protein UCP07580; KEGG: mjl:Mjls_2904 hypothetical protein. (298 aa)    
Predicted Functional Partners:
Tpau_0476
PFAM: alpha/beta hydrolase fold; KEGG: mav:MAV_4120 hydrolase, alpha/beta fold family protein, putative.
 
     0.902
Tpau_0477
PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: msm:MSMEG_3676 phenoxybenzoate dioxygenase beta subunit.
     0.837
Tpau_0475
PFAM: alpha/beta hydrolase fold; KEGG: cmi:CMM_2872 putative hydrolase/acyltransferase.
       0.773
Tpau_3512
Transcriptional regulator, MerR family; KEGG: nfa:nfa28610 putative transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR.
 
     0.641
Tpau_1142
PFAM: regulatory protein TetR; KEGG: rop:ROP_48200 putative TetR family transcriptional regulator.
  
     0.640
Tpau_0479
KEGG: fal:FRAAL3030 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR.
       0.520
Tpau_0480
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bcv:Bcav_2882 activator of HSP90 ATPase 1 family protein.
       0.520
Tpau_0612
KEGG: mgi:Mflv_3147 hypothetical protein.
  
     0.484
Tpau_2750
KEGG: rop:ROP_22570 alkane-1-monooxygenase; PFAM: fatty acid desaturase.
 
     0.477
Tpau_2535
PFAM: Limonene-12-epoxide hydrolase; KEGG: mmi:MMAR_1973 hypothetical protein.
  
     0.449
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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