Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Tpau_0501KEGG: nfa:nfa54010 hypothetical protein. (148 aa)    
Predicted Functional Partners:
Tpau_0502
KEGG: rha:RHA1_ro05516 hypothetical protein.
       0.669
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.669
Tpau_0504
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rop:ROP_56060 putative RNA methyltransferase.
       0.669
Tpau_0499
Hypothetical protein.
       0.540
Tpau_0500
PFAM: protein of unknown function DUF202; KEGG: mlu:Mlut_04300 predicted membrane protein.
       0.540
Tpau_0505
Alpha-1,6-mannanase; KEGG: rha:RHA1_ro05531 alpha-1,6-mannanase.
       0.475
Tpau_0498
PFAM: iron-containing alcohol dehydrogenase; 3- dehydroquinate synthase; KEGG: tfu:Tfu_2801 glycerol dehydrogenase.
       0.417
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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