Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0549KEGG: sen:SACE_0389 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR. (157 aa)    
Predicted Functional Partners:
Tpau_0550
TIGRFAM: tRNA-guanine transglycosylase, various specificities; drug resistance transporter, EmrB/QacA subfamily; KEGG: rha:RHA1_ro04399 major facilitator superfamily multidrug transporter; PFAM: major facilitator superfamily MFS_1; Queuine/other tRNA-ribosyltransferase.
 
  
 0.884
Tpau_0551
Hypothetical protein; KEGG: fra:Francci3_3820 alkaline phosphatase.
       0.656
Tpau_0548
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bcv:Bcav_3926 YbaK/prolyl-tRNA synthetase associated region.
  
    0.532
Tpau_0547
KEGG: rer:RER_05550 hypothetical protein.
       0.460
Tpau_0546
Cysteine desulfurase; KEGG: mab:MAB_0512 aminotransferase/cysteine desulfurase; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase.
       0.419
Tpau_0610
KEGG: nfa:nfa4440 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.410
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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