Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0553KEGG: rer:RER_06180 D-alanyl-D-alanine carboxypeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C. (456 aa)    
Predicted Functional Partners:
Tpau_0029
PFAM: penicillin-binding protein transpeptidase; KEGG: rha:RHA1_ro03698 peptidoglycan glycosyltransferase.
     
 0.954
Tpau_0952
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: nfa:nfa9380 putative penicillin-binding protein; Belongs to the peptidase S11 family.
     
 0.953
Tpau_2652
KEGG: rha:RHA1_ro01094 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
  
 0.947
Tpau_0554
KEGG: rop:ROP_43180 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: Protein of unknown function DUF2342.
  
  
 0.933
Tpau_0556
TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: mjl:Mjls_5161 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
     
 0.917
Tpau_0104
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: bcv:Bcav_2708 peptidase M15B and M15C dd- carboxypeptidase VanY/endolysin.
     
 0.905
Tpau_2545
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: nfa:nfa32010 hypothetical protein.
     
 0.905
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
 
   
 0.897
Tpau_0557
PFAM: Amidase; KEGG: rha:RHA1_ro04406 amidase.
       0.778
ppa
Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
       0.669
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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