Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0576PFAM: flavin reductase domain protein FMN-binding; KEGG: mul:MUL_4138 oxidase. (188 aa)    
Predicted Functional Partners:
Tpau_3843
Biphenyl-2,3-diol 1,2-dioxygenase; KEGG: mab:MAB_0585 2,3-dihydroxybiphenyl 1,2- dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
 
 
 0.958
Tpau_3845
PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: rop:ROP_44540 putative hydroxylase.
 
 
 0.945
Tpau_3842
PFAM: flavin reductase domain protein FMN-binding; KEGG: rer:RER_07580 oxidoreductase.
  
  
 
0.905
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
  
 0.648
Tpau_0575
KEGG: mxa:MXAN_4531 hypothetical protein.
       0.566
Tpau_0577
Hypothetical protein; KEGG: xca:xccb100_2218 flagellar hook-length control protein FliK.
       0.527
Tpau_0578
Hypothetical protein.
       0.527
Tpau_1372
KEGG: rer:RER_53410 alkanesulfonate monooxygenase.
 
  
 0.504
Tpau_0574
Hypothetical protein.
       0.419
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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