Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0580PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: abb:ABBFA_001634 NADH oxidase. (408 aa)    
Predicted Functional Partners:
Tpau_0601
PFAM: transcription factor CarD; KEGG: nfa:nfa4350 putative transcriptional regulator.
   
    0.585
Tpau_2957
KEGG: mab:MAB_4636 hypothetical protein.
 
     0.551
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.503
Tpau_3880
KEGG: rer:RER_05110 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein.
   
  
 0.455
Tpau_2435
PFAM: RNA binding S1 domain protein; KEGG: nfa:nfa18970 30S ribosomal protein S1.
   
  
 0.452
Tpau_2917
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: nfa:nfa42790 putative electron transfer flavoprotein beta subunit.
  
 
 0.436
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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