Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0597KEGG: rha:RHA1_ro04450 hypothetical protein. (264 aa)    
Predicted Functional Partners:
Tpau_0596
PFAM: carbonic anhydrase; KEGG: rop:ROP_43660 carbonic anhydrase.
       0.705
Tpau_1186
KEGG: mgi:Mflv_4727 hypothetical protein.
   
    0.609
Tpau_0595
HhH-GPD family protein; KEGG: nfa:nfa4290 putative A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop.
       0.599
Tpau_2329
KEGG: lxx:Lxx20650 hypothetical protein.
  
     0.512
Tpau_1726
PFAM: 4'-phosphopantetheinyl transferase; KEGG: rer:RER_26380 phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
 
     0.506
Tpau_4220
PFAM: major facilitator superfamily MFS_1; KEGG: rop:ROP_34530 hypothetical membrane protein.
  
     0.485
Tpau_2660
KEGG: nfa:nfa17510 putative lipoprotein.
  
     0.483
Tpau_0594
PFAM: Protein of unknown function DUF2236; KEGG: rer:RER_04190 hypothetical protein.
 
     0.447
Tpau_2299
KEGG: rha:RHA1_ro07244 hypothetical protein.
  
     0.436
Tpau_1085
KEGG: mab:MAB_3550c hypothetical protein.
  
     0.414
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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