Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tpau_0607KEGG: rop:ROP_63290 putative TetR family transcriptional regulator. (194 aa)    
Predicted Functional Partners:
Tpau_1283
KEGG: mab:MAB_3300c TetR family transcriptional regulator.
  
     0.768
Tpau_1142
PFAM: regulatory protein TetR; KEGG: rop:ROP_48200 putative TetR family transcriptional regulator.
  
     0.664
Tpau_1931
Acyltransferase, WS/DGAT/MGAT; KEGG: rha:RHA1_ro01601 hypothetical protein; TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089; Belongs to the long-chain O-acyltransferase family.
  
     0.626
Tpau_0606
RNA methyltransferase, TrmH family, group 3; KEGG: nfa:nfa4390 putative tRNA/rRNA methyltransferase; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.611
Tpau_1797
KEGG: rha:RHA1_ro06774 hypothetical protein.
  
     0.586
cysS
TIGRFAM: cysteinyl-tRNA synthetase; KEGG: rha:RHA1_ro04462 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.585
Tpau_0897
KEGG: abo:ABO_0057 hypothetical protein.
  
     0.575
Tpau_4180
PFAM: Protein of unknown function DUF2236; KEGG: msm:MSMEG_3590 hypothetical protein.
 
     0.538
Tpau_1267
PFAM: AMP-dependent synthetase and ligase; KEGG: rha:RHA1_ro00948 acyl-CoA synthetase.
  
   
 0.526
Tpau_0359
PFAM: regulatory protein TetR; KEGG: rop:ROP_11210 putative TetR family transcriptional regulator.
  
     0.485
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.