Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Tpau_0645PFAM: protein of unknown function DUF214; KEGG: lxx:Lxx14520 ABC transporter, permease protein. (454 aa)    
Predicted Functional Partners:
Tpau_0646
KEGG: lxx:Lxx14530 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.961
Tpau_0396
KEGG: nfa:nfa46550 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.836
Tpau_0644
KEGG: sen:SACE_2591 hypothetical protein.
  
    0.783
Tpau_0245
KEGG: fre:Franean1_0530 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.754
Tpau_2434
KEGG: rer:RER_54290 hypothetical protein.
  
 
 0.700
Tpau_0648
Integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: cms:CMS_1731 putative two component sensor kinase.
 
   
 0.639
Tpau_0649
Methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
 
     0.603
Tpau_0647
Two component transcriptional regulator, LuxR family; KEGG: cms:CMS_1730 putative two component system response regulator; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR.
     
 0.594
Tpau_0416
KEGG: rer:RER_11110 hypothetical protein.
  
     0.505
Tpau_0650
KEGG: rha:RHA1_ro04522 TetR family transcriptional regulator.
 
     0.477
Your Current Organism:
Tsukamurella paurometabola
NCBI taxonomy Id: 521096
Other names: T. paurometabola DSM 20162, Tsukamurella paurometabola ATCC 8368, Tsukamurella paurometabola DSM 20162, Tsukamurella paurometabola str. DSM 20162, Tsukamurella paurometabola strain DSM 20162
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